lotus
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INSTALLATION
Installation
USAGE
Overview
Lotus Input File
Output Files
API REFERENCE
Atoms.h
Droplet.h
FieldViz.h
Fitting.h
MDBase.h
Parameters.h
Quiver.h
Readers.h
Substrate.h
Time.h
Utils.h
Visualization.h
Writers.h
MISCELLANEOUS
Todo List
Index
lotus
Docs
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Index
A
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B
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C
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D
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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W
A
add (C++ function)
ArrayWriter (C++ class)
ArrayWriter::addQuantity (C++ function)
ArrayWriter::ArrayWriter (C++ function)
ArrayWriter::concatenateQuantityStrs (C++ function)
ArrayWriter::createQuantityDir (C++ function)
ArrayWriter::dropletPtr (C++ member)
ArrayWriter::dumpfileReaderPtr (C++ member)
ArrayWriter::getFilePath (C++ function)
ArrayWriter::getQuantityStr (C++ function)
ArrayWriter::headersArray (C++ member)
ArrayWriter::lengthPtrArray (C++ member)
ArrayWriter::numColumnsArray (C++ member)
ArrayWriter::setOutputQuantities (C++ function)
ArrayWriter::writeFrame (C++ function)
ArrayWriter::writeHeader (C++ function)
ArrayWriter::writeHeaders (C++ function)
ArrayWriter::writeQuantityFile (C++ function)
ArrayWriter::~ArrayWriter (C++ function)
atanh (C++ function)
Atom (C++ class)
Atom::calculateRadius (C++ function)
Atom::print (C++ function)
Atom::r (C++ member)
Atom::type (C++ member)
Atom::x (C++ member)
Atom::y (C++ member)
Atom::z (C++ member)
AtomArray (C++ class)
AtomArray::allocateArrays (C++ function)
AtomArray::allocated (C++ member)
AtomArray::AtomArray (C++ function)
AtomArray::deallocateArrays (C++ function)
AtomArray::getAtom (C++ function)
AtomArray::getIndex (C++ function)
AtomArray::numAtoms (C++ member)
AtomArray::printStats (C++ function)
AtomArray::r (C++ member)
AtomArray::setAtom (C++ function)
AtomArray::setNumAtoms (C++ function)
AtomArray::setSimData (C++ function)
AtomArray::simDataPtr (C++ member)
AtomArray::type (C++ member)
AtomArray::x (C++ member)
AtomArray::y (C++ member)
AtomArray::z (C++ member)
AtomArray::~AtomArray (C++ function)
B
BoxBounds (C++ class)
BoxBounds::xhi (C++ member)
BoxBounds::xlo (C++ member)
BoxBounds::yhi (C++ member)
BoxBounds::ylo (C++ member)
BoxBounds::zhi (C++ member)
BoxBounds::zlo (C++ member)
C
CircleFit (C++ class)
CircleFit::A (C++ member)
CircleFit::B (C++ member)
CircleFit::b (C++ member)
CircleFit::b_lin (C++ member)
CircleFit::C (C++ member)
CircleFit::chi2s (C++ member)
CircleFit::CircleFit (C++ function)
CircleFit::cosTheta (C++ member)
CircleFit::cutoff (C++ member)
CircleFit::D (C++ member)
CircleFit::deletePoints (C++ function)
CircleFit::E (C++ member)
CircleFit::findRadius (C++ function)
CircleFit::fit (C++ function)
CircleFit::fitOptions (C++ member)
CircleFit::gCirclePoints (C++ member)
CircleFit::GetChi2s (C++ function)
CircleFit::GetContactAngle (C++ function)
CircleFit::GetHeight (C++ function)
CircleFit::GetNumPoints (C++ function)
CircleFit::getRadius (C++ function)
CircleFit::GetResidual (C++ function)
CircleFit::getXCenter (C++ function)
CircleFit::getYCenter (C++ function)
CircleFit::gr (C++ member)
CircleFit::guessFit (C++ function)
CircleFit::gx0 (C++ member)
CircleFit::gy0 (C++ member)
CircleFit::height (C++ member)
CircleFit::inGraph (C++ function)
CircleFit::init (C++ member)
CircleFit::innerFit (C++ function)
CircleFit::Intersect (C++ function)
CircleFit::intersected (C++ member)
CircleFit::LinearContactAngle (C++ function)
CircleFit::LinearResidual (C++ function)
CircleFit::linMin (C++ member)
CircleFit::m (C++ member)
CircleFit::m_lin (C++ member)
CircleFit::minimizer (C++ member)
CircleFit::mirrorPoints (C++ function)
CircleFit::n (C++ member)
CircleFit::options (C++ member)
CircleFit::Print (C++ function)
CircleFit::r (C++ member)
CircleFit::refineFit (C++ function)
CircleFit::setContext (C++ function)
CircleFit::setGraph (C++ function)
CircleFit::SetTangentLine (C++ function)
CircleFit::simDataPtr (C++ member)
CircleFit::step (C++ member)
CircleFit::stepVal (C++ member)
CircleFit::SumOfSquares (C++ function)
CircleFit::sumsq (C++ member)
CircleFit::thetaDeg (C++ member)
CircleFit::updatePoints (C++ function)
CircleFit::width (C++ member)
CircleFit::x (C++ member)
CircleFit::x0 (C++ member)
CircleFit::x1 (C++ member)
CircleFit::x2 (C++ member)
CircleFit::x3 (C++ member)
CircleFit::xLinFit (C++ member)
CircleFit::y (C++ member)
CircleFit::y0 (C++ member)
CircleFit::y1 (C++ member)
CircleFit::y2 (C++ member)
CircleFit::y3 (C++ member)
CircleFit::yLinFit (C++ member)
CircleFit::~CircleFit (C++ function)
CircularBulk (C++ class)
CircularBulk::atomArrayPtr (C++ member)
CircularBulk::boundaryPointsArray (C++ member)
CircularBulk::calculateContactAngle (C++ function)
CircularBulk::calculateCylindricalVolume (C++ function)
CircularBulk::calculateHeight (C++ function)
CircularBulk::calculateRadius (C++ function)
CircularBulk::calculateSphericalVolume (C++ function)
CircularBulk::circle (C++ member)
CircularBulk::CircularBulk (C++ function)
CircularBulk::contactAngle (C++ member)
CircularBulk::fillOne (C++ function)
CircularBulk::findBoundaryPoints (C++ function)
CircularBulk::firstBulkBin (C++ member)
CircularBulk::fitCircle (C++ function)
CircularBulk::gCirclePoints (C++ member)
CircularBulk::hDroplet (C++ member)
CircularBulk::headers (C++ member)
CircularBulk::height (C++ member)
CircularBulk::numPoints (C++ member)
CircularBulk::options (C++ member)
CircularBulk::pointOk (C++ function)
CircularBulk::radius (C++ member)
CircularBulk::saveBoundaryPoints (C++ function)
CircularBulk::setContext (C++ function)
CircularBulk::setHist (C++ function)
CircularBulk::simDataPtr (C++ member)
CircularBulk::tanhFit (C++ member)
CircularBulk::volume (C++ member)
CircularBulk::~CircularBulk (C++ function)
CommandLineParser (C++ class)
CommandLineParser::CommandLineParser (C++ function)
CommandLineParser::configPath (C++ member)
CommandLineParser::options (C++ member)
CommandLineParser::parseArgs (C++ function)
CommandLineParser::print (C++ function)
countLines (C++ function)
D
DatafileReader (C++ class)
DatafileReader::DatafileReader (C++ function)
DatafileReader::HType (C++ member)
DatafileReader::inputStream (C++ member)
DatafileReader::liquidTypes (C++ member)
DatafileReader::numAtoms (C++ member)
DatafileReader::openStream (C++ function)
DatafileReader::options (C++ member)
DatafileReader::OType (C++ member)
DatafileReader::read (C++ function)
DatafileReader::readBoxBounds (C++ function)
DatafileReader::readMasses (C++ function)
DatafileReader::readNumAtoms (C++ function)
DatafileReader::readWaterBonds (C++ function)
DatafileReader::simDataPtr (C++ member)
DatafileReader::streamPtr (C++ member)
DensFigure (C++ class)
DensFigure::createLegend (C++ function)
DensFigure::createLines (C++ function)
DensFigure::deleteLegend (C++ function)
DensFigure::deleteLines (C++ function)
DensFigure::DensFigure (C++ function)
DensFigure::draw (C++ function)
DensFigure::drawHists (C++ function)
DensFigure::drawLegend (C++ function)
DensFigure::drawLines (C++ function)
DensFigure::dropletPtr (C++ member)
DensFigure::hLiquidDens (C++ member)
DensFigure::hSubstrateDens (C++ member)
DensFigure::monoHiLineDens (C++ member)
DensFigure::monoLimits (C++ member)
DensFigure::monoLoLineDens (C++ member)
DensFigure::setAxisLabels (C++ function)
DensFigure::setLegendStyle (C++ function)
DensFigure::setLineStyle (C++ function)
DensFigure::setStyle (C++ function)
DensFigure::setTitle (C++ function)
DensFigure::setValues (C++ function)
DensFigure::substratePtr (C++ member)
DensFigure::~DensFigure (C++ function)
dir_exists (C++ function)
Droplet (C++ class)
Droplet::atomArrayPtr (C++ member)
Droplet::bulk (C++ member)
Droplet::cDroplet (C++ member)
Droplet::convertUnits (C++ function)
Droplet::createCanvas (C++ function)
Droplet::createHists (C++ function)
Droplet::Droplet (C++ function)
Droplet::dropletCalculations (C++ function)
Droplet::fill (C++ function)
Droplet::fillOne (C++ function)
Droplet::findMonolayer (C++ function)
Droplet::getMass (C++ function)
Droplet::getMass1D (C++ function)
Droplet::hDroplet (C++ member)
Droplet::hLiquidDens (C++ member)
Droplet::monolayer (C++ member)
Droplet::options (C++ member)
Droplet::plotDensity (C++ function)
Droplet::rDensCyl (C++ member)
Droplet::reset (C++ function)
Droplet::setContext (C++ function)
Droplet::simDataPtr (C++ member)
Droplet::~Droplet (C++ function)
DropletFigure (C++ class)
DropletFigure::addLegendEntries (C++ function)
DropletFigure::bEText (C++ member)
DropletFigure::bulkEdge (C++ member)
DropletFigure::bulkEdgeLine (C++ member)
DropletFigure::cAText (C++ member)
DropletFigure::circlePtr (C++ member)
DropletFigure::contactAngle (C++ member)
DropletFigure::createCircle (C++ function)
DropletFigure::createLegend (C++ function)
DropletFigure::createLines (C++ function)
DropletFigure::deleteCircle (C++ function)
DropletFigure::deleteLegend (C++ function)
DropletFigure::deleteLines (C++ function)
DropletFigure::dHText (C++ member)
DropletFigure::draw (C++ function)
DropletFigure::drawAnnotations (C++ function)
DropletFigure::drawCircle (C++ function)
DropletFigure::drawGraph (C++ function)
DropletFigure::drawHist (C++ function)
DropletFigure::drawLegend (C++ function)
DropletFigure::drawLines (C++ function)
DropletFigure::drawText (C++ function)
DropletFigure::DropletFigure (C++ function)
DropletFigure::dropletHeight (C++ member)
DropletFigure::dropletPtr (C++ member)
DropletFigure::eCircle (C++ member)
DropletFigure::eGuessCircle (C++ member)
DropletFigure::gCirclePoints (C++ member)
DropletFigure::hDroplet (C++ member)
DropletFigure::heightLine (C++ member)
DropletFigure::mEText (C++ member)
DropletFigure::mHText (C++ member)
DropletFigure::mLText (C++ member)
DropletFigure::monoEdge (C++ member)
DropletFigure::monoEdgeLine (C++ member)
DropletFigure::monoHiLine (C++ member)
DropletFigure::monoLimits (C++ member)
DropletFigure::monoLoLine (C++ member)
DropletFigure::setAxisLabels (C++ function)
DropletFigure::setCircleStyle (C++ function)
DropletFigure::setGraphStyle (C++ function)
DropletFigure::setHistStyle (C++ function)
DropletFigure::setLegendStyle (C++ function)
DropletFigure::setLegendText (C++ function)
DropletFigure::setLineStyle (C++ function)
DropletFigure::setStyle (C++ function)
DropletFigure::setTitle (C++ function)
DropletFigure::setValues (C++ function)
DropletFigure::tangentLine (C++ member)
DropletFigure::textBox (C++ member)
DropletFigure::~DropletFigure (C++ function)
DumpfileReader (C++ class)
DumpfileReader::atomArrayPtr (C++ member)
DumpfileReader::countAtoms (C++ function)
DumpfileReader::countSteps (C++ function)
DumpfileReader::DumpfileReader (C++ function)
DumpfileReader::frameNum (C++ member)
DumpfileReader::frameReader (C++ member)
DumpfileReader::good (C++ function)
DumpfileReader::options (C++ member)
DumpfileReader::readFrame (C++ function)
DumpfileReader::simDataPtr (C++ member)
F
FieldViz (C++ class)
FieldViz::AddFieldFromData (C++ function)
FieldViz::CalculateColor (C++ function)
FieldViz::cmap (C++ member)
FieldViz::cmapFile (C++ member)
FieldViz::colorIndices (C++ member)
FieldViz::DISCRETE_FILTER_SIZE (C++ member)
FieldViz::DivideFieldByFrames (C++ function)
FieldViz::FieldViz (C++ function)
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[1]
,
[2]
FieldViz::FlowImagingLIC (C++ function)
FieldViz::GenBoxFiltrLUT (C++ function)
FieldViz::GenFieldFromData (C++ function)
FieldViz::HighPass (C++ function)
FieldViz::histEqExp (C++ member)
FieldViz::HistEqual (C++ function)
FieldViz::indVecs (C++ member)
FieldViz::Init (C++ function)
FieldViz::licLength (C++ member)
FieldViz::LINE_SQUARE_CLIP_MAX (C++ member)
FieldViz::LoadColormap (C++ function)
FieldViz::MakeWhiteNoise (C++ function)
FieldViz::MaxVal (C++ function)
FieldViz::MinVal (C++ function)
FieldViz::n_xBlocks (C++ member)
FieldViz::n_xPix (C++ member)
FieldViz::n_yBlocks (C++ member)
FieldViz::n_yPix (C++ member)
FieldViz::nAtoms (C++ member)
FieldViz::nFrames (C++ member)
FieldViz::nIter (C++ member)
FieldViz::NormalizVectrs (C++ function)
FieldViz::NormField (C++ function)
FieldViz::p_LUT0 (C++ member)
FieldViz::p_LUT1 (C++ member)
FieldViz::PerformLIC (C++ function)
FieldViz::pImage (C++ member)
FieldViz::pNoise (C++ member)
FieldViz::PostProcess (C++ function)
FieldViz::PreProcess (C++ function)
FieldViz::pVectr (C++ member)
FieldViz::ResetField (C++ function)
FieldViz::SetBounds (C++ function)
FieldViz::SetColormap (C++ function)
FieldViz::SetCylDataFromCart (C++ function)
FieldViz::SetData (C++ function)
FieldViz::SetLICParams (C++ function)
FieldViz::SetNAtoms (C++ function)
FieldViz::SetNumPixels (C++ function)
FieldViz::SmoothStep (C++ function)
FieldViz::SyntheszSaddle (C++ function)
FieldViz::vecAngles (C++ member)
FieldViz::vecMags (C++ member)
FieldViz::VECTOR_COMPONENT_MIN (C++ member)
FieldViz::vx (C++ member)
FieldViz::vy (C++ member)
FieldViz::WriteField (C++ function)
FieldViz::WriteField4Col (C++ function)
FieldViz::WriteImage2PPM (C++ function)
FieldViz::xField (C++ member)
FieldViz::xFieldTmp (C++ member)
FieldViz::xMax (C++ member)
FieldViz::xMin (C++ member)
FieldViz::xPixRes (C++ member)
FieldViz::xRange (C++ member)
FieldViz::xx (C++ member)
FieldViz::yField (C++ member)
FieldViz::yFieldTmp (C++ member)
FieldViz::yMax (C++ member)
FieldViz::yMin (C++ member)
FieldViz::yPixRes (C++ member)
FieldViz::yRange (C++ member)
FieldViz::yy (C++ member)
FieldViz::~FieldViz (C++ function)
Figure (C++ class)
Figure::canvas (C++ member)
Figure::createCanvas (C++ function)
Figure::createDirBase (C++ function)
Figure::createDirs (C++ function)
Figure::createImageDir (C++ function)
Figure::createROOTDir (C++ function)
Figure::Figure (C++ function)
Figure::getFilename (C++ function)
Figure::height (C++ member)
Figure::legend (C++ member)
Figure::options (C++ member)
Figure::outputDir (C++ member)
Figure::save (C++ function)
Figure::saveBase (C++ function)
Figure::saveImage (C++ function)
Figure::saveROOT (C++ function)
Figure::setCanvasStyle (C++ function)
Figure::setOutputDir (C++ function)
Figure::simDataPtr (C++ member)
Figure::title (C++ member)
Figure::width (C++ member)
Figure::xhi (C++ member)
Figure::xlo (C++ member)
Figure::yhi (C++ member)
Figure::ylo (C++ member)
Figure::~Figure (C++ function)
file_exists (C++ function)
Frame (C++ class)
Frame::atomsThisFrame (C++ member)
Frame::Frame (C++ function)
Frame::frameNum (C++ member)
Frame::frameStep (C++ member)
Frame::stepsThisFrame (C++ member)
Frame::time (C++ member)
FrameReader (C++ class)
FrameReader::atomArrayPtr (C++ member)
FrameReader::countAtoms (C++ function)
FrameReader::countSteps (C++ function)
FrameReader::frame (C++ member)
FrameReader::FrameReader (C++ function)
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[1]
FrameReader::inputStream (C++ member)
FrameReader::openStream (C++ function)
FrameReader::options (C++ member)
FrameReader::readFrame (C++ function)
FrameReader::setContext (C++ function)
FrameReader::simDataPtr (C++ member)
FrameReader::stepsPerFrame (C++ member)
FrameReader::timestep (C++ member)
FrameReader::timestepReader (C++ member)
FrameReader::updateFrame (C++ function)
G
Grid (C++ class)
Grid::allocateBins (C++ function)
Grid::allocated (C++ member)
Grid::calculateBins (C++ function)
Grid::calculateVolumeLimits (C++ function)
Grid::deallocateBins (C++ function)
Grid::dv (C++ member)
Grid::dz (C++ member)
Grid::init (C++ function)
Grid::nr (C++ member)
Grid::nv (C++ member)
Grid::nz (C++ member)
Grid::rhi (C++ member)
Grid::rhi_preround (C++ member)
Grid::rVals (C++ member)
Grid::setBounds (C++ function)
Grid::setSpacing (C++ function)
Grid::vhi (C++ member)
Grid::vhi_preround (C++ member)
Grid::zhi (C++ member)
Grid::zhi_preround (C++ member)
Grid::zlo (C++ member)
Grid::~Grid (C++ function)
H
HeaderReader (C++ class)
HeaderReader::boundsPtr (C++ member)
HeaderReader::inputStreamPtr (C++ member)
HeaderReader::lineNumPtr (C++ member)
HeaderReader::options (C++ member)
HeaderReader::readHeader (C++ function)
HeaderReader::setContext (C++ function)
HeaderReader::simDataPtr (C++ member)
HeaderReader::timestepPtr (C++ member)
I
InputStream (C++ class)
InputStream::filename (C++ member)
InputStream::InputStream (C++ function)
,
[1]
InputStream::lineNum (C++ member)
InputStream::nextLineBlank (C++ function)
InputStream::open (C++ function)
InputStream::peekLine (C++ function)
InputStream::pos (C++ member)
InputStream::search (C++ function)
,
[1]
InputStream::searchLine (C++ function)
,
[1]
InputStream::skipLines (C++ function)
InputStream::skipWhitespace (C++ function)
InputStream::stream (C++ member)
InputStream::verifyStream (C++ function)
InputStream::~InputStream (C++ function)
isIn (C++ function)
,
[1]
isLess (C++ function)
J
joinPath (C++ function)
L
LastFrame (C++ class)
LastFrame::extraSteps (C++ member)
LastFrame::frameNum (C++ member)
LastFrame::numSteps (C++ member)
LastFrame::setSteps (C++ function)
LineReader (C++ class)
LineReader::atom (C++ member)
LineReader::atomNumPtr (C++ member)
LineReader::boundsPtr (C++ member)
LineReader::input (C++ member)
LineReader::inputStreamPtr (C++ member)
LineReader::line (C++ member)
LineReader::lineNumPtr (C++ member)
LineReader::options (C++ member)
LineReader::readLine (C++ function)
LineReader::setContext (C++ function)
M
max (C++ function)
,
[1]
,
[2]
mean (C++ function)
,
[1]
min (C++ function)
,
[1]
Monolayer (C++ class)
Monolayer::atomArrayPtr (C++ member)
Monolayer::calculateRadius (C++ function)
Monolayer::convertUnits (C++ function)
Monolayer::createHist (C++ function)
Monolayer::deleteHist (C++ function)
Monolayer::fill (C++ function)
Monolayer::fillOne (C++ function)
Monolayer::findMonoLimits (C++ function)
Monolayer::height (C++ member)
Monolayer::histCreated (C++ member)
Monolayer::hMono (C++ member)
Monolayer::inMonolayer (C++ function)
Monolayer::monoFlux (C++ function)
Monolayer::Monolayer (C++ function)
Monolayer::options (C++ member)
Monolayer::radius (C++ member)
Monolayer::reset (C++ function)
Monolayer::setContext (C++ function)
Monolayer::simDataPtr (C++ member)
Monolayer::tanhFit (C++ member)
Monolayer::zlim (C++ member)
Monolayer::~Monolayer (C++ function)
monolayerTracker (C++ class)
monolayerTracker::id (C++ member)
monolayerTracker::monoAtoms (C++ member)
monolayerTracker::monoIDs (C++ member)
monolayerTracker::numMonoIDs (C++ member)
mult (C++ function)
N
NANO_DENS_TO_MACRO (C++ member)
O
Options (C++ class)
Options::circleRMax (C++ member)
Options::circleRMin (C++ member)
Options::circleX0Max (C++ member)
Options::circleX0Min (C++ member)
Options::circleY0Max (C++ member)
Options::circleY0Min (C++ member)
Options::configPath (C++ member)
Options::datafile (C++ member)
Options::dens_max (C++ member)
Options::dens_min (C++ member)
Options::densMax (C++ member)
Options::dumpfile (C++ member)
Options::dv (C++ member)
Options::dz (C++ member)
Options::expectedLiquidDensity (C++ member)
Options::fitCircle (C++ member)
Options::fromString (C++ function)
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[1]
,
[2]
,
[3]
Options::geometry (C++ member)
Options::liquidTypes (C++ member)
Options::mapHasKey (C++ function)
Options::monolayer (C++ member)
Options::monoTop (C++ member)
Options::numAtoms (C++ member)
Options::outLoc (C++ member)
Options::outputColWidth (C++ member)
Options::outputPrecision (C++ member)
Options::parseDefaultOption (C++ function)
Options::parseRequiredOption (C++ function)
Options::parseYaml (C++ function)
Options::plot_aspect (C++ member)
Options::plot_rmax (C++ member)
Options::plot_width (C++ member)
Options::plot_zmax (C++ member)
Options::printOption (C++ function)
,
[1]
Options::printOptions (C++ function)
Options::printYamlMap (C++ function)
Options::rDensCyl (C++ member)
Options::readConfig (C++ function)
Options::saveImages (C++ member)
Options::saveROOT (C++ member)
Options::solidTypes (C++ member)
Options::stepsPerFrame (C++ member)
Options::substrate (C++ member)
Options::substrateTop (C++ member)
Options::unsafeParseOption (C++ function)
,
[1]
Options::verbose (C++ member)
Options::waterBondType (C++ member)
Options::yamlMap (C++ member)
P
PI (C++ member)
Q
Quiver (C++ class)
Quiver::a (C++ member)
Quiver::arrowAngle (C++ member)
Quiver::arrowHead (C++ member)
Quiver::arrowLen (C++ member)
Quiver::arrowWidth (C++ member)
Quiver::Calculate (C++ function)
Quiver::canvasCreated (C++ member)
Quiver::color (C++ member)
Quiver::cQuiver (C++ member)
Quiver::Draw (C++ function)
Quiver::drawMarkers (C++ member)
Quiver::drawText (C++ member)
Quiver::factor (C++ member)
Quiver::Fill (C++ function)
Quiver::h (C++ member)
Quiver::hCount (C++ member)
Quiver::hvx (C++ member)
Quiver::hvy (C++ member)
Quiver::k (C++ member)
Quiver::l (C++ member)
Quiver::levels (C++ member)
Quiver::m (C++ member)
Quiver::maxSet (C++ function)
Quiver::maxVal (C++ member)
Quiver::min (C++ function)
Quiver::minSet (C++ function)
Quiver::minVal (C++ member)
Quiver::minWidth (C++ member)
Quiver::N (C++ member)
Quiver::nElements (C++ member)
Quiver::nLevels (C++ member)
Quiver::norm (C++ member)
Quiver::normStream (C++ member)
Quiver::normString (C++ member)
Quiver::nx (C++ member)
Quiver::ny (C++ member)
Quiver::padding (C++ member)
Quiver::Quiver (C++ function)
Quiver::Reset (C++ function)
Quiver::SaveAs (C++ function)
Quiver::SetArrowParams (C++ function)
Quiver::SetDrawOptions (C++ function)
Quiver::SetLevels (C++ function)
Quiver::setLevels (C++ member)
Quiver::SetTitle (C++ function)
Quiver::vxk (C++ member)
Quiver::vyk (C++ member)
Quiver::x1 (C++ member)
Quiver::xhi (C++ member)
Quiver::xLen (C++ member)
Quiver::xlo (C++ member)
Quiver::y1 (C++ member)
Quiver::yhi (C++ member)
Quiver::yLen (C++ member)
Quiver::ylo (C++ member)
Quiver::~Quiver (C++ function)
R
roundUp (C++ function)
S
ScalarWriter (C++ class)
ScalarWriter::addQuantity (C++ function)
ScalarWriter::closeFiles (C++ function)
ScalarWriter::dropletPtr (C++ member)
ScalarWriter::dumpfileReaderPtr (C++ member)
ScalarWriter::files (C++ member)
ScalarWriter::getQuantityStr (C++ function)
ScalarWriter::openFile (C++ function)
ScalarWriter::openFileBase (C++ function)
ScalarWriter::ScalarWriter (C++ function)
ScalarWriter::setOutputQuantities (C++ function)
ScalarWriter::writeFrame (C++ function)
ScalarWriter::writeHeaders (C++ function)
ScalarWriter::~ScalarWriter (C++ function)
SimData (C++ class)
SimData::deleteWaterBonds (C++ function)
SimData::framePtr (C++ member)
SimData::lastFrame (C++ member)
SimData::liquidTypes (C++ member)
SimData::masses (C++ member)
SimData::monoTop (C++ member)
SimData::numAtoms (C++ member)
SimData::numFrames (C++ member)
SimData::numSteps (C++ member)
SimData::options (C++ member)
SimData::setNumSteps (C++ function)
SimData::setOptions (C++ function)
SimData::setStepsPerFrame (C++ function)
SimData::simBounds (C++ member)
SimData::SimData (C++ function)
SimData::solidTypes (C++ member)
SimData::stepsPerFrame (C++ member)
SimData::substrateTop (C++ member)
SimData::waterBonds (C++ member)
SimData::~SimData (C++ function)
solveLinear (C++ function)
square (C++ function)
stddev (C++ function)
,
[1]
stripTrailingSlash (C++ function)
StrVecMap (C++ type)
Substrate (C++ class)
Substrate::atomArrayPtr (C++ member)
Substrate::convertUnits (C++ function)
Substrate::createHist (C++ function)
Substrate::dz (C++ member)
Substrate::fill (C++ function)
Substrate::fillOne (C++ function)
Substrate::findLimits (C++ function)
Substrate::getMass (C++ function)
Substrate::hSubstrateDens (C++ member)
Substrate::options (C++ member)
Substrate::rDensCyl (C++ member)
Substrate::reset (C++ function)
Substrate::setContext (C++ function)
Substrate::simDataPtr (C++ member)
Substrate::Substrate (C++ function)
Substrate::zlim (C++ member)
Substrate::~Substrate (C++ function)
sum (C++ function)
T
TanhFigure (C++ class)
TanhFigure::addLegendEntries (C++ function)
TanhFigure::createGraph (C++ function)
TanhFigure::createLegend (C++ function)
TanhFigure::createLines (C++ function)
TanhFigure::deleteGraph (C++ function)
TanhFigure::deleteLegend (C++ function)
TanhFigure::deleteLines (C++ function)
TanhFigure::draw (C++ function)
TanhFigure::drawFunction (C++ function)
TanhFigure::drawGraph (C++ function)
TanhFigure::drawHist (C++ function)
TanhFigure::drawLegend (C++ function)
TanhFigure::drawLines (C++ function)
TanhFigure::gPoints (C++ member)
TanhFigure::halfLdLine (C++ member)
TanhFigure::hiGuess (C++ member)
TanhFigure::ld (C++ member)
TanhFigure::ldLine (C++ member)
TanhFigure::lowGuess (C++ member)
TanhFigure::numLines (C++ member)
TanhFigure::numTexts (C++ member)
TanhFigure::posText (C++ member)
TanhFigure::rowColNum (C++ member)
TanhFigure::rowOrCol (C++ member)
TanhFigure::setAxisLabels (C++ function)
TanhFigure::setGraphStyle (C++ function)
TanhFigure::setHistStyle (C++ function)
TanhFigure::setLegendStyle (C++ function)
TanhFigure::setLinePositions (C++ function)
TanhFigure::setLineStyle (C++ function)
TanhFigure::setStyle (C++ function)
TanhFigure::setText (C++ function)
TanhFigure::setTitle (C++ function)
TanhFigure::setValues (C++ function)
TanhFigure::startPoint (C++ member)
TanhFigure::TanhFigure (C++ function)
TanhFigure::tanhFitPtr (C++ member)
TanhFigure::tanhLines (C++ member)
TanhFigure::tanhTextBox (C++ member)
TanhFigure::tanhTexts (C++ member)
TanhFigure::updateRowCol (C++ function)
TanhFigure::val (C++ member)
TanhFigure::w (C++ member)
TanhFigure::w_guess (C++ member)
TanhFigure::x0 (C++ member)
TanhFigure::x0_guess (C++ member)
TanhFigure::x0Line (C++ member)
TanhFigure::~TanhFigure (C++ function)
TanhFit (C++ class)
TanhFit::createFunction (C++ function)
TanhFit::empty (C++ member)
TanhFit::err (C++ member)
TanhFit::fitBounds (C++ member)
TanhFit::fitOptions (C++ member)
TanhFit::fTanh (C++ member)
TanhFit::getBoundary (C++ function)
TanhFit::getLiquidDensity (C++ function)
TanhFit::getWidth (C++ function)
TanhFit::good (C++ function)
TanhFit::guessTanhFit (C++ function)
TanhFit::hTanh (C++ member)
TanhFit::initialGuess (C++ function)
TanhFit::isEmpty (C++ function)
TanhFit::ld (C++ member)
TanhFit::options (C++ member)
TanhFit::residual (C++ function)
TanhFit::rowColNum (C++ member)
TanhFit::rowOrCol (C++ member)
TanhFit::setContext (C++ function)
TanhFit::setFitBounds (C++ function)
TanhFit::setFitNum (C++ function)
TanhFit::setFitType (C++ function)
TanhFit::setHist (C++ function)
TanhFit::simDataPtr (C++ member)
TanhFit::solve (C++ function)
TanhFit::solveLinear (C++ function)
TanhFit::TanhFit (C++ function)
TanhFit::w (C++ member)
TanhFit::x0 (C++ member)
TanhFit::xmax (C++ member)
TanhFit::xmin (C++ member)
TanhFit::~TanhFit (C++ function)
Timestep (C++ class)
Timestep::stepNum (C++ member)
Timestep::time (C++ member)
Timestep::Timestep (C++ function)
TimestepReader (C++ class)
TimestepReader::atomArrayPtr (C++ member)
TimestepReader::atomNum (C++ member)
TimestepReader::headerReader (C++ member)
TimestepReader::inputStreamPtr (C++ member)
TimestepReader::lineNum (C++ member)
TimestepReader::lineReader (C++ member)
TimestepReader::options (C++ member)
TimestepReader::readTimestep (C++ function)
TimestepReader::resetAtomCounter (C++ function)
TimestepReader::setContext (C++ function)
TimestepReader::simDataPtr (C++ member)
TimestepReader::timestepBounds (C++ member)
TimestepReader::timestepPtr (C++ member)
TimestepReader::TimestepReader (C++ function)
TimestepReader::xhi (C++ member)
TimestepReader::xlo (C++ member)
TimestepReader::yhi (C++ member)
TimestepReader::ylo (C++ member)
TimestepReader::zhi (C++ member)
TimestepReader::zlo (C++ member)
W
WriterBase (C++ class)
WriterBase::createDataDir (C++ function)
WriterBase::dataPtrArray (C++ member)
WriterBase::deleteFmtStrs (C++ function)
WriterBase::fmtArray (C++ member)
WriterBase::getFmtStr (C++ function)
,
[1]
,
[2]
WriterBase::leftJustify (C++ member)
WriterBase::line (C++ member)
WriterBase::numQuantities (C++ member)
WriterBase::options (C++ member)
WriterBase::outputDir (C++ member)
WriterBase::path (C++ member)
WriterBase::quantityNameArray (C++ member)
WriterBase::setOutputDir (C++ function)
WriterBase::simDataPtr (C++ member)
WriterBase::storeType (C++ function)
,
[1]
WriterBase::typeArray (C++ member)
WriterBase::WriterBase (C++ function)
WriterBase::~WriterBase (C++ function)
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